.binary.activematrix.check

.build.button.function

.build.command.argument

.eval.command

.find.frame

.give.doublequote

.is.binary.matrix

.isISA

.make.correct.frame

.makeResultList

.makeSuperbiclustResultList

.isListofBiclustGUIresults

.makesearchdata

.order.button.frames

.output.sparse.txt

.rcmdr.warning

.transform.vector2text

.update.biclustering.object

robust.fuse.support

SearchMethodData

Setwd

as.ExprSet

.bicare2biclust

.fabia2biclust

.putbefore

.correctdataforresults

.tobiclust

.isbiclustGUIresult

.tobiclust_transf

.isBiclustresult

.isa2biclust

.checkplotgridpref

greenred

redgreen

viridis

.GetEnvBiclustGUI

.AssignEnvBiclustGUI

indexedBic

BCDIAG_isa2biclust

<p>List of internal functions used in various functions in the package.</p>

Internal Functions

A plug-in for R Commander ('Rcmdr'). The package is a Graphical
User Interface (GUI) in which several biclustering methods can be executed,
followed by diagnostics and plots of the results. Further, the GUI also has
the possibility to connect the methods to more general diagnostic packages for
biclustering. Biclustering methods from 'biclust', 'fabia', 's4vd', 'iBBiG',
'isa2', 'BiBitR', 'rqubic' and 'BicARE' are implemented. Additionally, 'superbiclust' and
'BcDiag' are also implemented to be able to further investigate results. The
GUI also provides a couple of extra utilities to export, save, search through
and plot the results. 'RcmdrPlugin.BiclustGUI' also provides a very specific
framework for biclustering in which new methods, diagnostics and plots can be
added. Scripts were prepared so that R-package developers can freely design
their own dialogs in the GUI which can then be added by the maintainer of
'RcmdrPlugin.BiclustGUI'. These scripts do not required any knowledge of 'tcltk'
and 'Rcmdr' and are easy to fill in. (Note: rqubic currently requires manual installation through BiocManager::install('rqubic').)

Internal Functions: List of Internal Functions

Description

Arguments

Details